Transcript: lnc-HSD17B2-2:1

Basic information

LNCipedia transcript ID: lnc-HSD17B2-2:1 
LNCipedia gene ID: lnc-HSD17B2-2
Ensembl Gene ID: ENSG00000260862
Ensembl Transcript ID: ENST00000567359
RefSeq ID: NR_110938
Location (hg38): chr16:82773319-82829638
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4037 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000567359.1; RP11-22H5.2-001; OTTHUMT00000432934.1; NONHSAT143994; NR_110938; NR_110938.1
Alternative gene names: ENSG00000260862.1; RP11-22H5.2; OTTHUMG00000176637.1; AC099506.1; LOC101928446


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.6547 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HSD17B2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HSD17B2-2:1
4.0 lnc-HSD17B2-2:1
4.1 lnc-HSD17B2-2:1
5.0 lnc-HSD17B2-2:1
5.1 lnc-CRISPLD2-48:1
5.2 lnc-HSD17B2-2:1