Transcript: lnc-HS3ST4-1:12

Basic information

LNCipedia transcript ID: lnc-HS3ST4-1:12 
LNCipedia gene ID: lnc-HS3ST4-1
Location (hg38): chr16:26322512-26323061
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 550 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT141420; ENST00000596241.1
Alternative gene names: ENSG00000231876.3; AC009158.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.0625 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HS3ST4-1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HS3ST4-1:12
4.0 lnc-HS3ST4-1:12
4.1 lnc-HS3ST4-1:12
5.0 lnc-HS3ST4-1:12
5.1 lnc-SGF29-40:13
5.2 lnc-HS3ST4-1:12