Transcript: lnc-HPGDS-1:1

Basic information

LNCipedia transcript ID: lnc-HPGDS-1:1 
LNCipedia gene ID: lnc-HPGDS-1
Ensembl Gene ID: ENSG00000246541
Ensembl Transcript ID: ENST00000501965
Location (hg38): chr4:94117792-94207556
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1042 bp
Exons: 9
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000501965; ENST00000501965.2; RP11-363G15.2-001; OTTHUMT00000364267.2; NONHSAT097441
Alternative gene names: ENSG00000246541; RP11-363G15.2; ENSG00000246541.2; OTTHUMG00000161244.2; AC096746.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.0827 non-coding 
CPAT coding probability 3.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HPGDS-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HPGDS-1:1
3.1 lnc-HPGDS-1:1
4.0 lnc-HPGDS-1:1
4.1 lnc-HPGDS-1:1
5.0 lnc-HPGDS-1:1
5.1 lnc-GPRIN3-17:1
5.2 lnc-HPGDS-1:1