Transcript: lnc-HPGD-1:1

Basic information

LNCipedia transcript ID: lnc-HPGD-1:1 
LNCipedia gene ID: lnc-HPGD-1
Location (hg38): chr4:174523701-174540344
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2202 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000515178.1; RP11-440I14.2-001; OTTHUMT00000362238.1; NONHSAT099319
Alternative gene names: ENSG00000250596.1; RP11-440I14.2; OTTHUMG00000160773.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.3797 non-coding 
CPAT coding probability 16.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HPGD-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HPGD-1:1
4.0 lnc-HPGD-1:1
4.1 lnc-HPGD-1:1
5.0 lnc-HPGD-1:1
5.1 lnc-HPGD-1:1
5.2 lnc-HPGD-1:1