Transcript: lnc-HOXA3-1:7

Basic information

LNCipedia transcript ID: lnc-HOXA3-1:7 
LNCipedia gene ID: lnc-HOXA3-1
Ensembl Gene ID: ENSG00000273433
Ensembl Transcript ID: ENST00000467897
Location (hg38): chr7:27128969-27152561
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 919 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000467897.2
Alternative gene names: ENSG00000273433.1; RP1-170O19.22; AC004080.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 490.791 coding 
CPAT coding probability 7.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HOXA3-1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HOXA4-1:3
4.0 lnc-HOXA6-1:3
4.1 lnc-HOXA6-1:3
5.0 lnc-HOXA6-1:3
5.1 lnc-HOXA3-1:3
5.2 lnc-HOXA3-1:7