Transcript: lnc-HOOK1-1:4

Basic information

LNCipedia transcript ID: lnc-HOOK1-1:4 
LNCipedia gene ID: lnc-HOOK1-1
Location (hg38): chr1:59772795-59788848
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 547 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000424725; ENST00000424725.1; RP4-782L23.1-001; OTTHUMT00000024223.1; NONHSAT003575
Alternative gene names: ENSG00000231816; RP4-782L23.1; ENSG00000231816.1; OTTHUMG00000008767.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.1178 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOOK1-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGGY-1:2
3.1 lnc-FGGY-1:1
4.0 lnc-FGGY-1:1
4.1 lnc-FGGY-1:1
5.0 lnc-FGGY-1:1
5.1 lnc-USP1-27:3
5.2 lnc-HOOK1-1:4