Transcript: lnc-HOMER1-8:1

Basic information

LNCipedia transcript ID: lnc-HOMER1-8:1 
LNCipedia gene ID: lnc-HOMER1-8
Location (hg38): chr5:79609282-79612266
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2985 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000080294.1|ENCT00000359069.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2.9369 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOMER1-8:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HOMER1-8:1
5.0 lnc-HOMER1-8:1
5.1 lnc-ANKRD34B-26:1
5.2 lnc-HOMER1-8:1