Transcript: lnc-HOGA1-1:1

Basic information

LNCipedia transcript ID: lnc-HOGA1-1:1 
LNCipedia gene ID: lnc-HOGA1-1
Location (hg38): chr10:97618805-97622759
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 2157 bp
Exons: 2
Sources: Biogazelle lncRNA chip; NONCODE v4
Alternative transcript names: ENST00000508674; NONHSAT015873
Alternative gene names: ENSG00000250201


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.858 non-coding 
CPAT coding probability 5.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOGA1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HOGA1-1:1
3.1 lnc-HOGA1-1:1
4.0 lnc-HOGA1-1:1
4.1 lnc-HOGA1-1:1
5.0 lnc-HOGA1-1:1
5.1 lnc-SMC3-183:1
5.2 lnc-HOGA1-1:1