Transcript: lnc-HNRNPH1-1:1

Basic information

LNCipedia transcript ID: lnc-HNRNPH1-1:1 
LNCipedia gene ID: lnc-HNRNPH1-1
Ensembl Gene ID: ENSG00000244945
Ensembl Transcript ID: ENST00000500262
RefSeq ID: NR_110560
Location (hg38): chr5:179595904-179603741
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1966 bp
Exons: 9
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000500262.1; RP11-1379J22.2-001; OTTHUMT00000371905.1; NONHSAT105591; NR_110560; NR_110560.1
Alternative gene names: ENSG00000244945.1; RP11-1379J22.2; OTTHUMG00000163175.1; AC136604.2; LOC101928445


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.8923 non-coding 
CPAT coding probability 26.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HNRNPH1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HNRNPH1-1:1
4.0 lnc-HNRNPH1-1:1
4.1 lnc-HNRNPH1-1:1
5.0 lnc-HNRNPH1-1:1
5.1 lnc-MGAT4B-19:1
5.2 lnc-HNRNPH1-1:1