Transcript: lnc-HNF1A-1:5

Basic information

LNCipedia transcript ID: lnc-HNF1A-1:5 
LNCipedia gene ID: lnc-HNF1A-1
Location (hg38): chr12:120904459-120906448
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1990 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000010633.1|HBMT00000318274.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -21.1252 non-coding 
CPAT coding probability 6.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HNF1A-1:5 no no no no

Available literature

  1. Lee (2014), Long noncoding RNAs as putative biomarkers for prostate cancer detection., J Mol Diagn


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HNF1A-1:5
5.0 lnc-HNF1A-1:5
5.1 lnc-COX6A1-12:1
5.2 lnc-HNF1A-1:5