Transcript: lnc-HMX1-6:2

Basic information

LNCipedia transcript ID: lnc-HMX1-6:2 
LNCipedia gene ID: lnc-HMX1-6
Location (hg38): chr4:9179760-9381395
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1436 bp
Exons: 7
Sources: Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000429096; NONHSAT095128
Alternative gene names: ENSG00000226350; AC108519.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 59.5541 non-coding 
CPAT coding probability 8.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HMX1-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-1396O13.13.1-1:2
3.1 lnc-RP11-1396O13.13.1-1:2
4.0 lnc-RP11-1396O13.13.1-1:2
4.1 lnc-RP11-1396O13.13.1-1:2
5.0 lnc-RP11-1396O13.13.1-1:2
5.1 lnc-AFAP1-17:2
5.2 lnc-HMX1-6:2