Transcript: lnc-HMHB1-2:1

Basic information

LNCipedia transcript ID: lnc-HMHB1-2:1 
LNCipedia gene ID: lnc-HMHB1-2
Location (hg38): chr5:143559219-143562548
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 526 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009532; NONHSAT104355
Alternative gene names: XLOC_004592; linc-HMHB1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -210.6121 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMHB1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HMHB1-1:1
3.1 lnc-HMHB1-2:1
4.0 lnc-HMHB1-2:1
4.1 lnc-HMHB1-2:1
5.0 lnc-HMHB1-2:1
5.1 lnc-PCDHGA7-32:2
5.2 lnc-HMHB1-2:1