Transcript: lnc-HMCN1-2:1

Basic information

LNCipedia transcript ID: lnc-HMCN1-2:1 
LNCipedia gene ID: lnc-HMCN1-2
Location (hg38): chr1:185558379-185565631
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 616 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000349; ENST00000439633; ENST00000439633.1; GS1-204I12.2-001; OTTHUMT00000086351.1; NONHSAT008428
Alternative gene names: XLOC_000495; linc-HMCN1-1; ENSG00000228309; GS1-204I12.2; ENSG00000228309.1; OTTHUMG00000035578.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -276.5869 non-coding 
CPAT coding probability 2.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMCN1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HMCN1-1:1
3.1 lnc-HMCN1-2:1
4.0 lnc-HMCN1-2:1
4.1 lnc-HMCN1-2:1
5.0 lnc-HMCN1-2:1
5.1 lnc-C1orf21-23:1
5.2 lnc-HMCN1-2:1