Transcript: lnc-HMBOX1-5:6

Basic information

LNCipedia transcript ID: lnc-HMBOX1-5:6 
LNCipedia gene ID: lnc-HMBOX1-5
Location (hg38): chr8:29494252-29586556
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 7370 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000253632.1|MICT00000341190.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -10.2954 non-coding 
CPAT coding probability 2.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMBOX1-5:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HMBOX1-5:6
5.0 lnc-HMBOX1-5:6
5.1 lnc-WRN-33:5
5.2 lnc-HMBOX1-5:6