Transcript: lnc-HLA-DPB1-13:1

Basic information

LNCipedia transcript ID: lnc-HLA-DPB1-13:1 
LNCipedia gene ID: lnc-HLA-DPB1-13
Location (hg38): chr6:33029688-33030167
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 383 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000083598.1|MICT00000301756.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -61.5841 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HLA-DPB1-13:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HLA-DPB1-13:1
5.0 lnc-HLA-DPB1-13:1
5.1 lnc-TNF-80:1
5.2 lnc-HLA-DPB1-13:1