Transcript: lnc-HLA-DMB-3:1

Basic information

LNCipedia transcript ID: lnc-HLA-DMB-3:1 
LNCipedia gene ID: lnc-HLA-DMB-3
Location (hg38): chr6:32966531-32968659
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2129 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT108952
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.3479 non-coding 
CPAT coding probability 6.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HLA-DMB-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-XXbac-BPG181M17.5.1-1:1
4.0 lnc-XXbac-BPG181M17.5.1-1:1
4.1 lnc-XXbac-BPG181M17.5.1-1:1
5.0 lnc-XXbac-BPG181M17.5.1-1:1
5.1 lnc-LEMD2-23:1
5.2 lnc-HLA-DMB-3:1