Transcript: lnc-HIVEP2-5:2

Basic information

LNCipedia transcript ID: lnc-HIVEP2-5:2 
LNCipedia gene ID: lnc-HIVEP2-5
RefSeq ID: NR_027311
Location (hg38): chr6:142526455-142637836
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2290 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011140; NONHSAT115315; NR_027311; NR_027311.1
Alternative gene names: XLOC_005862; linc-NMBR-1; LOC153910


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.2763 non-coding 
CPAT coding probability 18.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIVEP2-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HIVEP2-2:2
3.1 lnc-HIVEP2-5:2
4.0 lnc-HIVEP2-5:2
4.1 lnc-HIVEP2-5:2
5.0 lnc-HIVEP2-5:2
5.1 lnc-HIVEP2-5:2
5.2 lnc-HIVEP2-5:2