Transcript: lnc-HIST3H2A-2:4

Basic information

LNCipedia transcript ID: lnc-HIST3H2A-2:4 
LNCipedia gene ID: lnc-HIST3H2A-2
Location (hg38): chr1:228486367-228487083
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 717 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000097301.1|FTMT20200012566.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -4.4188 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIST3H2A-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RP5-915N17.9.1-2:5
5.0 lnc-RP5-915N17.9.1-2:5
5.1 lnc-TRIM17-8:4
5.2 lnc-HIST3H2A-2:4