Transcript: lnc-HIST2H3D-2:1

Basic information

LNCipedia transcript ID: lnc-HIST2H3D-2:1 
LNCipedia gene ID: lnc-HIST2H3D-2
Location (hg38): chr1:149782877-149811757
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 459 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000420462.1; RP11-196G18.21-001; OTTHUMT00000098222.2; NONHSAT006248
Alternative gene names: ENSG00000242663.1; RP11-196G18.21; OTTHUMG00000040891.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.1399 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIST2H3D-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HIST2H3D-2:1
4.0 lnc-HIST2H3D-2:1
4.1 lnc-HIST2H3D-2:1
5.0 lnc-HIST2H3D-2:1
5.1 lnc-HIST2H3D-2:1
5.2 lnc-HIST2H3D-2:1