Transcript: lnc-HGF-1:2

Basic information

LNCipedia transcript ID: lnc-HGF-1:2 
LNCipedia gene ID: lnc-HGF-1
Location (hg38): chr7:81576387-81625226
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4571 bp
Exons: 10
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000413944.2; AC010091.1-002; OTTHUMT00000339912.2; NONHSAT147586
Alternative gene names: ENSG00000233491.2; AC010091.1; OTTHUMG00000155403.3; ENSG00000233491.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.2907 non-coding 
CPAT coding probability 2.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HGF-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HGF-1:2
4.0 lnc-HGF-1:2
4.1 lnc-HGF-1:2
5.0 lnc-HGF-1:2
5.1 lnc-HGF-1:2
5.2 lnc-HGF-1:2