Transcript: lnc-HES1-2:7

Basic information

LNCipedia transcript ID: lnc-HES1-2:7 
LNCipedia gene ID: lnc-HES1-2
Ensembl Gene ID: ENSG00000229964
Ensembl Transcript ID: ENST00000457815
Location (hg38): chr3:194091561-194109174
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 406 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005697; ENST00000457815; ENST00000457815.1; RP11-135A1.3-001; OTTHUMT00000342624.1; NONHSAT147272
Alternative gene names: XLOC_002975; linc-HES1-1; ENSG00000229964; RP11-135A1.3; ENSG00000229964.1; OTTHUMG00000155980.1; AC080129.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.4572 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HES1-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HES1-1:7
3.1 lnc-HES1-2:7
4.0 lnc-HES1-2:7
4.1 lnc-HES1-2:7
5.0 lnc-HES1-2:7
5.1 lnc-MUC20-37:9
5.2 lnc-HES1-2:7