Transcript: lnc-HERPUD2-1:2

Basic information

LNCipedia transcript ID: lnc-HERPUD2-1:2 
LNCipedia gene ID: lnc-HERPUD2-1
Location (hg38): chr7:35614636-35615821
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1091 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013776; NONHSAT120078
Alternative gene names: XLOC_006409; linc-TBX20-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.3275 non-coding 
CPAT coding probability 5.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HERPUD2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HERPUD2-1:2
3.1 lnc-HERPUD2-1:2
4.0 lnc-HERPUD2-1:2
4.1 lnc-HERPUD2-1:2
5.0 lnc-HERPUD2-1:2
5.1 lnc-SFRP4-45:2
5.2 lnc-HERPUD2-1:2