Transcript: lnc-HEATR6-1:8

Basic information

LNCipedia transcript ID: lnc-HEATR6-1:8 
LNCipedia gene ID: lnc-HEATR6-1
Location (hg38): chr17:60083566-60088293
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 447 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000566140.1; CTD-2319I12.1-001; OTTHUMT00000431475.1; ENST00000566140.5
Alternative gene names: ENSG00000261040.1; CTD-2319I12.1; OTTHUMG00000176074.1; ENSG00000261040.2; ENSG00000261040.6; WFDC21P


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.2208 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HEATR6-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HEATR6-1:8
4.0 lnc-HEATR6-1:8
4.1 lnc-HEATR6-1:8
5.0 lnc-HEATR6-1:8
5.1 lnc-TUBD1-4:27
5.2 lnc-HEATR6-1:8