Transcript: lnc-HDDC3-2:1

Basic information

LNCipedia transcript ID: lnc-HDDC3-2:1 
LNCipedia gene ID: lnc-HDDC3-2
Ensembl Gene ID: ENSG00000259661
Ensembl Transcript ID: ENST00000560522
Location (hg38): chr15:90920218-90921186
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 795 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560522.1; AC068831.15-001; OTTHUMT00000418389.1; NONHSAT048443
Alternative gene names: ENSG00000259661.1; AC068831.15; OTTHUMG00000172402.1; AC068831.6; AC068831.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -190.6401 non-coding 
CPAT coding probability 0.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDDC3-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HDDC3-2:1
4.0 lnc-HDDC3-2:1
4.1 lnc-HDDC3-2:1
5.0 lnc-HDDC3-2:1
5.1 lnc-CIB1-12:1
5.2 lnc-HDDC3-2:1