Transcript: lnc-HCAR1-1:2

Basic information

LNCipedia transcript ID: lnc-HCAR1-1:2 
LNCipedia gene ID: lnc-HCAR1-1
Location (hg38): chr12:122726076-122726504
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 429 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT031531; ENST00000602891.1
Alternative gene names: ENSG00000270134.1; RP11-324E6.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.4333 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HCAR1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HCAR3-1:1
4.0 lnc-HCAR3-1:1
4.1 lnc-HCAR3-1:1
5.0 lnc-HCAR3-1:1
5.1 lnc-SBNO1-18:1
5.2 lnc-HCAR1-1:2