Transcript: lnc-HBE1-1:4

Basic information

LNCipedia transcript ID: lnc-HBE1-1:4 
LNCipedia gene ID: lnc-HBE1-1
Location (hg38): chr11:5304976-5505613
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1001 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000420465.1; AC104389.28-003; OTTHUMT00000142963.2; NONHSAT017678; ENST00000420465.5
Alternative gene names: ENSG00000167355.3; AC104389.28; OTTHUMG00000066670.2; ENSG00000167355.7; AC087380.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.495 non-coding 
CPAT coding probability 2.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HBE1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HBE1-1:4
4.0 lnc-HBE1-1:4
4.1 lnc-HBE1-1:4
5.0 lnc-HBE1-1:4
5.1 lnc-OR52A1-10:4
5.2 lnc-HBE1-1:4