Transcript: lnc-HAGH-1:1

Basic information

LNCipedia transcript ID: lnc-HAGH-1:1 
LNCipedia gene ID: lnc-HAGH-1
Ensembl Gene ID: ENSG00000260541
Ensembl Transcript ID: ENST00000570247
Location (hg38): chr16:1841020-1843547
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 220 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000570247.1; LA16c-429E7.1-001; OTTHUMT00000433901.1; NONHSAT052018
Alternative gene names: ENSG00000260541.1; LA16c-429E7.1; OTTHUMG00000176812.1; AL031722.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HAGH-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HAGH-1:1
4.0 lnc-HAGH-1:1
4.1 lnc-HAGH-1:1
5.0 lnc-HAGH-1:1
5.1 lnc-PKMYT1-73:1
5.2 lnc-HAGH-1:1