Transcript: lnc-H2AFY-3:1

Basic information

LNCipedia transcript ID: lnc-H2AFY-3:1 
LNCipedia gene ID: lnc-H2AFY-3
Location (hg38): chr5:135264134-135276076
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2159 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc003lak_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.8798 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-H2AFY-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTC-349C3.2.1-3:1
4.0 lnc-CTC-349C3.2.1-3:1
4.1 lnc-CTC-349C3.2.1-3:1
5.0 lnc-CTC-349C3.2.1-3:1
5.1 lnc-TIFAB-5:1
5.2 lnc-H2AFY-3:1