Transcript: lnc-GUCY1A2-1:1

Basic information

LNCipedia transcript ID: lnc-GUCY1A2-1:1 
LNCipedia gene ID: lnc-GUCY1A2-1
Location (hg38): chr11:106674012-106679340
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5329 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000561520.1; RP13-259F12.2-001; OTTHUMT00000422524.1; NONHSAT023988
Alternative gene names: ENSG00000260512.1; RP13-259F12.2; OTTHUMG00000173221.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.2651 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GUCY1A2-1:1 yes no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GUCY1A2-1:1
4.0 lnc-GUCY1A2-1:1
4.1 lnc-GUCY1A2-1:1
5.0 lnc-GUCY1A2-1:1
5.1 lnc-DCUN1D5-27:1
5.2 lnc-GUCY1A2-1:1