Transcript: lnc-GTF2B-15:18

Basic information

LNCipedia transcript ID: lnc-GTF2B-15:18 
LNCipedia gene ID: lnc-GTF2B-15
Location (hg38): chr1:87903898-87905539
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 280 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001562; NONHSAT004310
Alternative gene names: XLOC_000902; linc-SEP15-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -310.1165 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GTF2B-15:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GTF2B-5:3
3.1 lnc-GTF2B-5:3
4.0 lnc-GTF2B-5:3
4.1 lnc-GTF2B-5:3
5.0 lnc-GTF2B-5:3
5.1 lnc-RBMXL1-15:18
5.2 lnc-GTF2B-15:18