Transcript: lnc-GTF2B-15:17

Basic information

LNCipedia transcript ID: lnc-GTF2B-15:17 
HGNC Gene Symbol: lnc-GTF2B-15    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1773
Ensembl Gene ID: ENSG00000237505
Ensembl Transcript ID: ENST00000437598
Location (hg38): chr1:87899909-87905714
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 787 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000558; ENST00000437598; ENST00000437598.1; RP5-1027O11.1-001; OTTHUMT00000092710.1; NONHSAT004308
Alternative gene names: XLOC_000902; linc-SEP15-2; ENSG00000224235; RP5-1027O11.1; ENSG00000224235.1; OTTHUMG00000037985.1; LINC01773; ENSG00000237505.7; PKN2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.338 non-coding 
CPAT coding probability 1.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GTF2B-15:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GTF2B-5:2
3.1 lnc-GTF2B-5:2
4.0 lnc-GTF2B-5:2
4.1 lnc-GTF2B-5:2
5.0 lnc-GTF2B-5:2
5.1 lnc-RBMXL1-15:17
5.2 lnc-GTF2B-15:17