Transcript: lnc-GTF2B-15:11

Basic information

LNCipedia transcript ID: lnc-GTF2B-15:11 
LNCipedia gene ID: lnc-GTF2B-15
Location (hg38): chr1:88472316-88474178
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 659 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001564; NONHSAT004320
Alternative gene names: XLOC_000904; linc-SEP15-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.6368 non-coding 
CPAT coding probability 0.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GTF2B-15:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GTF2B-3:1
3.1 lnc-GTF2B-3:1
4.0 lnc-GTF2B-3:1
4.1 lnc-GTF2B-3:1
5.0 lnc-GTF2B-3:1
5.1 lnc-RBMXL1-15:11
5.2 lnc-GTF2B-15:11