Transcript: lnc-GTF2B-15:10

Basic information

LNCipedia transcript ID: lnc-GTF2B-15:10 
LNCipedia gene ID: lnc-GTF2B-15
Location (hg38): chr1:88528835-88529885
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 300 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001565; NONHSAT004322
Alternative gene names: XLOC_000905; linc-SEP15-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -207.3721 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GTF2B-15:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GTF2B-2:2
3.1 lnc-GTF2B-2:2
4.0 lnc-GTF2B-12:2
4.1 lnc-GTF2B-12:2
5.0 lnc-GTF2B-12:2
5.1 lnc-RBMXL1-15:10
5.2 lnc-GTF2B-15:10