Transcript: lnc-GTF2B-15:1

Basic information

LNCipedia transcript ID: lnc-GTF2B-15:1 
HGNC Gene Symbol: lnc-GTF2B-15    
HGNC Full Gene Name: PKN2 antisense RNA 1
Ensembl Gene ID: ENSG00000237505
Ensembl Transcript ID: ENST00000458097
RefSeq ID: NR_110682
Location (hg38): chr1:88537513-88685204
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3542 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000458097; ENST00000458097.1; RP11-76N22.2-001; OTTHUMT00000027733.1; NONHSAT004324; NR_110682; ENST00000458097.5; NR_110682.1
Alternative gene names: ENSG00000237505; RP11-76N22.2; ENSG00000237505.1; OTTHUMG00000010024.1; ENSG00000237505.2; ENSG00000237505.6; PKN2-AS1; ; ENSG00000237505.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.504 non-coding 
CPAT coding probability 4.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GTF2B-15:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GTF2B-1:1
3.1 lnc-GTF2B-1:1
4.0 PKN2-AS1:1
4.1 PKN2-AS1:1
5.0 PKN2-AS1:1
5.1 lnc-RBMXL1-15:1
5.2 lnc-GTF2B-15:1