Transcript: lnc-GSDMC-34:17

Basic information

LNCipedia transcript ID: lnc-GSDMC-34:17 
HGNC Gene Symbol: lnc-GSDMC-34    
HGNC Full Gene Name: CCDC26 long non-coding RNA
Ensembl Gene ID: ENSG00000229140
Ensembl Transcript ID: ENST00000520048
Location (hg38): chr8:129352429-129574991
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 904 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520048; ENST00000520048.1; CCDC26-003; OTTHUMT00000380582.1; NONHSAT129117
Alternative gene names: ENSG00000229140; RP11-3O20.1; ENSG00000229140.3; CCDC26; OTTHUMG00000164848.1; ENSG00000229140.4; ENSG00000229140.8; MGC27434; RAM; ENSG00000229140.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.32 non-coding 
CPAT coding probability 33.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GSDMC-34:17 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res
  2. Hirano (2015), Long noncoding RNA, CCDC26, controls myeloid leukemia cell growth through regulation of KIT expression., Mol. Cancer
  3. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget
  4. Chinen (2014), 8q24 amplified segments involve novel fusion genes between NSMCE2 and long noncoding RNAs in acute myelogenous leukemia., J Hematol Oncol
  5. Dryden (2014), Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C., Genome Res.
  6. Tseng (2014), PVT1 dependence in cancer with MYC copy-number increase., Nature
  7. Enciso-Mora (2013), Deciphering the 8q24.21 association for glioma., Hum. Mol. Genet.
  8. Jin (2011), Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk., Carcinogenesis
  9. Yin (2006), Co-resistance to retinoic acid and TRAIL by insertion mutagenesis into RAM., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GSDMC-1:5
3.1 lnc-GSDMC-1:5
4.0 CCDC26:5
4.1 CCDC26:5
5.0 CCDC26:5
5.1 lnc-FAM84B-34:17
5.2 lnc-GSDMC-34:17