Transcript: lnc-GRXCR1-4:3

Basic information

LNCipedia transcript ID: lnc-GRXCR1-4:3 
LNCipedia gene ID: lnc-GRXCR1-4
Ensembl Gene ID: ENSG00000250657
Ensembl Transcript ID: ENST00000507388
Location (hg38): chr4:43340875-43345600
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 653 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007523; ENST00000507388; ENST00000507388.1; RP11-1E6.1-001; OTTHUMT00000360574.2; NONHSAT096208
Alternative gene names: XLOC_003526; linc-GUF1-3; ENSG00000250657; RP11-1E6.1; ENSG00000250657.1; OTTHUMG00000160433.2; AC097451.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.8928 non-coding 
CPAT coding probability 4.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRXCR1-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GRXCR1-3:3
3.1 lnc-GRXCR1-4:3
4.0 lnc-GRXCR1-4:3
4.1 lnc-GRXCR1-4:3
5.0 lnc-GRXCR1-4:3
5.1 lnc-GABRB1-18:4
5.2 lnc-GRXCR1-4:3