Transcript: lnc-GRP-3:1

Basic information

LNCipedia transcript ID: lnc-GRP-3:1 
LNCipedia gene ID: lnc-GRP-3
Ensembl Gene ID: ENSG00000267000
Ensembl Transcript ID: ENST00000589242
Location (hg38): chr18:59459072-59465682
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 487 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT059563; ENST00000589242.1
Alternative gene names: ENSG00000267000.1; RP11-27G24.3; AC016229.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.504 non-coding 
CPAT coding probability 1.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRP-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GRP-3:1
4.0 lnc-GRP-3:1
4.1 lnc-GRP-3:1
5.0 lnc-GRP-3:1
5.1 lnc-WDR7-40:1
5.2 lnc-GRP-3:1