Transcript: lnc-GRIFIN-1:2

Basic information

LNCipedia transcript ID: lnc-GRIFIN-1:2 
LNCipedia gene ID: lnc-GRIFIN-1
Location (hg38): chr7:2475430-2476894
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 649 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000417742; ENST00000417742.1; GRIFIN-002; OTTHUMT00000325020.1; NONHSAT118807
Alternative gene names: ENSG00000236734; GRIFIN; ENSG00000236734.2; OTTHUMG00000152042.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -280.2942 non-coding 
CPAT coding probability 6.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRIFIN-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BRAT1-1:1
3.1 lnc-BRAT1-1:1
4.0 lnc-BRAT1-1:1
4.1 lnc-BRAT1-1:1
5.0 lnc-BRAT1-1:1
5.1 lnc-GRIFIN-1:1
5.2 lnc-GRIFIN-1:2