Transcript: lnc-GREM2-8:2

Basic information

LNCipedia transcript ID: lnc-GREM2-8:2 
LNCipedia gene ID: lnc-GREM2-8
Ensembl Gene ID: ENSG00000259776
Ensembl Transcript ID: ENST00000561926
Location (hg38): chr1:239247808-239250818
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3011 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561926.1; RP11-544D21.2-001; OTTHUMT00000432173.1
Alternative gene names: ENSG00000259776.1; RP11-544D21.2; OTTHUMG00000176474.1; AC093426.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.4917 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GREM2-8:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GREM2-8:2
4.0 lnc-GREM2-8:2
4.1 lnc-GREM2-8:2
5.0 lnc-GREM2-8:2
5.1 lnc-GREM2-8:2
5.2 lnc-GREM2-8:2