Transcript: lnc-GREM2-4:1

Basic information

LNCipedia transcript ID: lnc-GREM2-4:1 
LNCipedia gene ID: lnc-GREM2-4
Ensembl Gene ID: ENSG00000231979
Ensembl Transcript ID: ENST00000430542
Location (hg38): chr1:239915439-239916955
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 443 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000770; ENST00000430542; ENST00000430542.1; RP11-35L17.3-001; OTTHUMT00000095648.1; NONHSAT010486
Alternative gene names: XLOC_001275; linc-ZP4-5; ENSG00000231979; RP11-35L17.3; ENSG00000231979.1; OTTHUMG00000039651.1; AL356361.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -387.1808 non-coding 
CPAT coding probability 4.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GREM2-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GREM2-2:1
3.1 lnc-GREM2-4:1
4.0 lnc-GREM2-4:1
4.1 lnc-GREM2-4:1
5.0 lnc-GREM2-4:1
5.1 lnc-GREM2-4:1
5.2 lnc-GREM2-4:1