Transcript: lnc-GREB1-1:5

Basic information

LNCipedia transcript ID: lnc-GREB1-1:5 
LNCipedia gene ID: lnc-GREB1-1
Location (hg38): chr2:11681437-11683328
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1194 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000228496.1|ENST00000435175.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -56.5052 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GREB1-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-GREB1-1:5
5.0 lnc-GREB1-1:5
5.1 lnc-SNX17-174:3
5.2 lnc-GREB1-1:5