Transcript: lnc-GRAMD2B-15:1

Basic information

LNCipedia transcript ID: lnc-GRAMD2B-15:1 
LNCipedia gene ID: lnc-GRAMD2B-15
Location (hg38): chr5:125368568-125369149
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 582 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000507341; ENST00000507341.1; RP11-395P13.2-001; OTTHUMT00000371332.1; NONHSAT103554
Alternative gene names: ENSG00000249932; RP11-395P13.2; ENSG00000249932.1; OTTHUMG00000163015.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.0206 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRAMD2B-15:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-43D2.2.1-10:1
3.1 lnc-RP11-43D2.2.1-15:1
4.0 lnc-RP11-43D2.2.1-15:1
4.1 lnc-RP11-43D2.2.1-15:1
5.0 lnc-RP11-43D2.2.1-15:1
5.1 lnc-PDLIM4-122:1
5.2 lnc-GRAMD2B-15:1