Transcript: lnc-GPR88-1:1

Basic information

LNCipedia transcript ID: lnc-GPR88-1:1 
LNCipedia gene ID: lnc-GPR88-1
Location (hg38): chr1:100428847-100478732
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 2406 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_99_chr1:100894402-100944288_kidney
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.3681 non-coding 
CPAT coding probability 1.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPR88-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPR88-1:1
4.0 lnc-GPR88-1:1
4.1 lnc-GPR88-1:1
5.0 lnc-GPR88-1:1
5.1 lnc-SLC30A7-20:1
5.2 lnc-GPR88-1:1