Transcript: lnc-GPR3-2:1

Basic information

LNCipedia transcript ID: lnc-GPR3-2:1 
LNCipedia gene ID: lnc-GPR3-2
Ensembl Gene ID: ENSG00000237429
Ensembl Transcript ID: ENST00000443579
Location (hg38): chr1:27525805-27530561
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 283 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000171; ENST00000443579.1; RP1-159A19.4-001; OTTHUMT00000009779.1; NONHSAT001904
Alternative gene names: XLOC_000107; linc-FAM76A-2; ENSG00000237429.1; RP1-159A19.4; OTTHUMG00000003517.1; BX293535.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.7393 non-coding 
CPAT coding probability 8.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPR3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR3-2:1
3.1 lnc-GPR3-2:1
4.0 lnc-GPR3-2:1
4.1 lnc-GPR3-2:1
5.0 lnc-GPR3-2:1
5.1 lnc-SMPDL3B-6:1
5.2 lnc-GPR3-2:1