Transcript: lnc-GPR161-4:1

Basic information

LNCipedia transcript ID: lnc-GPR161-4:1 
LNCipedia gene ID: lnc-GPR161-4
Location (hg38): chr1:168245581-168247430
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1850 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT007426; NR_026844
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.8887 non-coding 
CPAT coding probability 57.42% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GPR161-4:1 yes no no no

Available literature

  1. Fang (2014), A distinct set of long non-coding RNAs in childhood MLL-rearranged acute lymphoblastic leukemia: biology and epigenetic target., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD36BP1-1:1
4.0 lnc-ANKRD36BP1-1:1
4.1 lnc-ANKRD36BP1-1:1
5.0 lnc-ANKRD36BP1-1:1
5.1 lnc-SH2D1B-74:1
5.2 lnc-GPR161-4:1