Transcript: lnc-GPCPD1-8:9

Basic information

LNCipedia transcript ID: lnc-GPCPD1-8:9 
HGNC Gene Symbol: lnc-GPCPD1-8    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1729
Ensembl Gene ID: ENSG00000225640
Ensembl Transcript ID: ENST00000450640
RefSeq ID: NR_109860
Location (hg38): chr20:5507875-5510002
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 358 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00027995; ENST00000450640; ENST00000450640.1; RP5-1022P6.4-001; OTTHUMT00000077876.1; NR_109860; NR_109860.1
Alternative gene names: XLOC_013643; linc-PROKR2-4; ENSG00000225640; RP5-1022P6.4; ENSG00000225640.1; OTTHUMG00000031808.1; ; LINC01729; LOC101929207


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.1623 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPCPD1-8:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPCPD1-1:6
3.1 lnc-GPCPD1-1:6
4.0 LINC00654:9
4.1 LINC00654:9
5.0 LINC00654:9
5.1 lnc-RNF24-46:9
5.2 lnc-GPCPD1-8:9