Transcript: lnc-GPCPD1-8:19

Basic information

LNCipedia transcript ID: lnc-GPCPD1-8:19 
HGNC Gene Symbol: lnc-GPCPD1-8    
HGNC Full Gene Name: long intergenic non-protein coding RNA 654
Ensembl Gene ID: ENSG00000205181
Ensembl Transcript ID: ENST00000589201
Location (hg38): chr20:5501696-5504527
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 579 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT078492; ENST00000589201.1
Alternative gene names: ENSG00000205181.5; LINC00654;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.2145 non-coding 
CPAT coding probability 1.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPCPD1-8:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPCPD1-1:17
4.0 LINC00654:14
4.1 LINC00654:14
5.0 LINC00654:14
5.1 lnc-RNF24-46:19
5.2 lnc-GPCPD1-8:19