Transcript: lnc-GPCPD1-8:10

Basic information

LNCipedia transcript ID: lnc-GPCPD1-8:10 
LNCipedia gene ID: lnc-GPCPD1-8
Location (hg38): chr20:5500323-5504613
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1857 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000379053; ENST00000379053.2; RP5-1022P6.6-001; OTTHUMT00000077878.1
Alternative gene names: ENSG00000205181; RP5-1022P6.6; ENSG00000205181.2; OTTHUMG00000031810.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.5258 non-coding 
CPAT coding probability 43.33% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GPCPD1-8:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPCPD1-1:7
3.1 lnc-GPCPD1-1:7
4.0 LINC00654:10
4.1 LINC00654:10
5.0 LINC00654:10
5.1 lnc-RNF24-46:10
5.2 lnc-GPCPD1-8:10