Transcript: lnc-GPBP1-3:11

Basic information

LNCipedia transcript ID: lnc-GPBP1-3:11 
LNCipedia gene ID: lnc-GPBP1-3
Location (hg38): chr5:57650659-57679885
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1260 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000075950.1|FTMT21900015941.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -68.8122 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPBP1-3:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-GPBP1-3:11
5.0 lnc-GPBP1-3:11
5.1 lnc-GPBP1-16:5
5.2 lnc-GPBP1-3:11