Transcript: lnc-GPBP1-1:1

Basic information

LNCipedia transcript ID: lnc-GPBP1-1:1 
LNCipedia gene ID: lnc-GPBP1-1
Ensembl Gene ID: ENSG00000250961
Ensembl Transcript ID: ENST00000506106
Location (hg38): chr5:57395060-57533424
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 897 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506106.1; CTD-2023N9.1-001; OTTHUMT00000369242.1; NONHSAT101576
Alternative gene names: ENSG00000250961.1; CTD-2023N9.1; OTTHUMG00000162323.2; AC025470.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.2025 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPBP1-1:1 no no no no

Available literature

  1. Goedert (2016), RMEL3, a novel BRAFV600E-associated long noncoding RNA, is required for MAPK and PI3K signaling in melanoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPBP1-1:1
4.0 lnc-GPBP1-1:1
4.1 lnc-GPBP1-1:1
5.0 lnc-GPBP1-1:1
5.1 lnc-GPBP1-11:1
5.2 lnc-GPBP1-1:1